LiteFold

Mgnify

MGnify protein catalogues — microbiome-derived protein sequences from EBI’s MGnify platform with train/test splits for downstream metagenomic protein tasks.

Original source

Rows: 3,226
On disk: 68 kB
Downloads: 904
Updated: May 27

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Column statistics

How the columns are distributed

Over 2,902 rows of default/train

access_note

string_label

Default config indexes Mgnify files. Stream raw FASTA/table payloads from sequences/ and tables/ with huggingface_hub.100%

compression

string_label

zstd97%

dataset_id

string_label

mgnify_proteins100%

download_pattern

string_label

sequences/sequence_mgnify_current_release_mgy_clusters.fa.gz/shard-*.fasta.zst22%
sequences/sequence_mgnify_current_release_mgy_proteins_23.fa.gz/shard-*.fasta.zst3%
sequences/sequence_mgnify_current_release_mgy_proteins_22.fa.gz/shard-*.fasta.zst3%

file_id

string_text

min: 9
median: 85
mean: 84.97
max: 98

is_original_table_copy

bool

False100%
True0%

is_sequence_shard

bool

True97%
False3%

is_split_manifest

bool

False100%
True0%

is_split_part

bool

False99%
True1%

is_table_file

bool

False98%
True2%

logical_table_bytes_total

int

min: 2381.0B
median: 2381.0B
mean: 2381.0B
max: 2381.0B

logical_table_count_total

int

min: 28
median: 28
mean: 28
max: 28

logical_table_size_bytes

int

min: -1
median: -1
mean: 8.3B
max: 709.8B

part_index

int

min: -1
median: -1
mean: -0.90
max: 17

path

string_text

min: 9
median: 85
mean: 84.97
max: 98

repo_file_count

int

min: 3,226
median: 3,226
mean: 3,226
max: 3,226

repo_id

string_label

LiteFold/Mgnify100%

repo_total_bytes

int

min: 3156.1B
median: 3156.1B
mean: 3156.1B
max: 3156.1B

role

string_label

sequence_shard97%
table_split_part1%
table_jsonl1%

sequence_shard_bytes_total

int

min: 342.8B
median: 342.8B
mean: 342.8B
max: 342.8B

sequence_shard_count_total

int

min: 3,148
median: 3,148
mean: 3,148
max: 3,148

sequence_source_bytes

int

min: -1
median: 10.9B
mean: 25.0B
max: 75.1B

sequence_source_shard_count

int

min: -1
median: 99
mean: 234.57
max: 717

shard_index

int

min: -1
median: 60
mean: 118.45
max: 717

size_bytes

int

min: 467
median: 110M
mean: 1.0B
max: 193.2B

source_family

string_label

mgy_clusters23%
mgy_proteins_233%
mgy_proteins_223%

source_file

string_label

sequence/mgnify/current_release/mgy_clusters.fa.gz22%
sequence/mgnify/current_release/mgy_proteins_23.fa.gz3%
sequence/mgnify/current_release/mgy_proteins_22.fa.gz3%

source_sha

string_label

4823aa306c32be5800a6ad6a1a6afd256bece606100%

source_slug

string_label

sequence_mgnify_current_release_mgy_clusters.fa.gz22%
sequence_mgnify_current_release_mgy_proteins_22.fa.gz3%
sequence_mgnify_current_release_mgy_proteins_23.fa.gz3%

split_bucket

int

min: 1
median: 5
mean: 5.02
max: 9

split_chunk_bytes

int

min: -1
median: -1
mean: 689M
max: 40.0B

split_part_count

int

min: -1
median: -1
mean: -0.78
max: 18

table_repo_bytes_total

int

min: 2813.3B
median: 2813.3B
mean: 2813.3B
max: 2813.3B

table_repo_file_count_total

int

min: 76
median: 76
mean: 76
max: 76