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Corollary
  1. Catalog
  2. Datasets
  3. opig/OAS

opig

OAS

Observed Antibody Space: a curated database of over one billion antibody sequences from immune repertoire sequencing studies, the standard resource for antibody ML.

Original source
Rows
940,174
On disk
—
Downloads
92

Last 30 days

Updated
Jan 22

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Column statistics

How the columns are distributed

Over 470,087 rows of default/train

ANARCI_numbering_heavy

string_text
min
848
median
1,571
mean
1570.59
max
2,106

ANARCI_numbering_light

string_text
min
920

Splits

2
  • default/train
  • paired/train

Query support

  • Row preview
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  • Full-text search
  • SQL filter
  • Column statistics

Provenance

Licence
cc-by-4.0
Likes
1

Fields

BiologyMedicineChemistry
median
1,386
mean
1396.00
max
1,611

ANARCI_status_heavy

string_label
  • |Deletions: 10, 73||||98%
  • |Deletions: 1, 10, 73|||Shorter than IMGT defined: fw1|1%
  • |Deletions: 10, 73, 128|||Shorter than IMGT defined: fw4|1%

ANARCI_status_light

string_label
  • |||||95%
  • ||||Shorter than IMGT defined: fw4|3%
  • ||||Shorter than IMGT defined: fw1|1%

Isotype_heavy

string_label
  • IGHM74%
  • IGHA14%
  • IGHG12%

Isotype_light

string_label
  • Bulk100%
  • IGHM0%

Redundancy_heavy

string_label
  • 1100%

Redundancy_light

string_label
  • 1100%

c_region_heavy

string_text
min
1
median
71
mean
93.96
max
490

0.03% empty

c_region_light

string_text
min
1
median
136
mean
165.14
max
516

0.00% empty

cdr1_aa_heavy

string_text
min
1
median
8
mean
8.36
max
24

cdr1_aa_light

string_text
min
2
median
7
mean
7.54
max
22

cdr1_end_heavy

string_label
  • 23524%
  • 23615%
  • 2147%

cdr1_end_light

string_label
  • 20314%
  • 18910%
  • 1938%

cdr1_heavy

string_text
min
3
median
24
mean
25.09
max
72

cdr1_light

string_text
min
6
median
21
mean
22.63
max
66

cdr1_start_heavy

string_label
  • 21224%
  • 21315%
  • 1917%

cdr1_start_light

string_label
  • 16913%
  • 18311%
  • 17210%

cdr2_aa_heavy

string_text
min
1
median
8
mean
7.81
max
27

cdr2_aa_light

string_text
min
2
median
3
mean
3.05
max
14

0.00% empty

cdr2_end_heavy

string_label
  • 31021%
  • 3119%
  • 2896%

cdr2_end_light

string_label
  • 26313%
  • 2499%
  • 2538%

0.00% empty

cdr2_heavy

string_text
min
4
median
24
mean
23.42
max
81

cdr2_light

string_text
min
1
median
9
mean
9.16
max
42

0.00% empty

cdr2_start_heavy

string_label
  • 28722%
  • 28814%
  • 2666%

cdr2_start_light

string_label
  • 25513%
  • 2419%
  • 2458%

0.00% empty

cdr3_aa_heavy

string_text
min
3
median
15
mean
15.79
max
58

cdr3_aa_light

string_text
min
4
median
9
mean
9.76
max
23

cdr3_end_heavy

string_label
  • 466.04%
  • 469.03%
  • 463.03%

cdr3_end_light

string_label
  • 398.010%
  • 384.08%
  • 399.07%

cdr3_heavy

string_text
min
9
median
45
mean
47.36
max
174

cdr3_light

string_text
min
12
median
27
mean
29.29
max
69

cdr3_start_heavy

string_label
  • 425.022%
  • 426.09%
  • 404.06%

cdr3_start_light

string_label
  • 372.014%
  • 358.010%
  • 362.08%

complete_vdj_heavy

string_label
  • T96%
  • F4%

complete_vdj_light

string_label
  • T93%
  • F7%

d_alignment_end_heavy

string_label
  • 315.05%
  • 318.05%
  • 312.05%

2.9% empty

d_alignment_end_light

string_label
  • 309.00%
  • 320.00%

100.0% empty

d_alignment_start_heavy

string_label
  • 303.08%
  • 300.07%
  • 301.07%

2.9% empty

d_alignment_start_light

string_label
  • 301.00%
  • 311.00%

100.0% empty

d_call_heavy

string_label
  • IGHD3-10*0112%
  • IGHD6-19*018%
  • IGHD2-15*018%

2.9% empty

d_call_light

string_label
  • IGHD3-3*010%
  • IGHD4-17*010%

100.0% empty

d_cigar_heavy

string_text
min
10
median
15
mean
14.58
max
20

2.9% empty

d_cigar_light

string_label
  • 451S11N10M549S10N0%
  • 430S7N9M585S0%

100.0% empty

d_germline_alignment_aa_heavy

string_text
min
1
median
4
mean
4.17
max
12

2.9% empty

d_germline_alignment_aa_light

string_label
  • GDY0%
  • WSG0%

100.0% empty

d_germline_alignment_heavy

string_text
min
5
median
13
mean
13.84
max
37

2.9% empty

d_germline_alignment_light

string_label
  • GGTGACTAC0%
  • TTTGGAGTGG0%

100.0% empty

d_germline_end_heavy

string_label
  • 21.09%
  • 18.08%
  • 16.07%

2.9% empty

d_germline_end_light

string_label
  • 16.00%
  • 21.00%

100.0% empty

d_germline_start_heavy

string_label
  • 1.012%
  • 3.09%
  • 5.08%

2.9% empty

d_germline_start_light

string_label
  • 8.00%
  • 12.00%

100.0% empty

d_identity_heavy

string_label
  • 100.076%
  • 90.02%
  • 90.9092%

2.9% empty

d_identity_light

string_label
  • 100.00%

100.0% empty

d_score_heavy

string_label
  • 14.1469%
  • 12.2239%
  • 16.0697%

2.9% empty

d_score_light

string_label
  • 17.9920%
  • 19.9140%

100.0% empty

d_sequence_alignment_aa_heavy

string_text
min
1
median
4
mean
4.17
max
12

2.9% empty

d_sequence_alignment_aa_light

string_label
  • GDY0%
  • WSG0%

100.0% empty

d_sequence_alignment_heavy

string_text
min
5
median
13
mean
13.84
max
37

2.9% empty

d_sequence_alignment_light

string_label
  • GGTGACTAC0%
  • TTTGGAGTGG0%

100.0% empty

d_sequence_end_heavy

string_label
  • 451.02%
  • 448.02%
  • 445.02%

2.9% empty

d_sequence_end_light

string_label
  • 439.00%
  • 461.00%

100.0% empty

d_sequence_start_heavy

string_label
  • 437.03%
  • 439.03%
  • 440.03%

2.9% empty

d_sequence_start_light

string_label
  • 452.00%
  • 431.00%

100.0% empty

d_support_heavy

string_text
min
3
median
7
mean
6.91
max
9

2.9% empty

d_support_light

string_label
  • 1.6560%
  • 0.43070%

100.0% empty

fwr1_aa_heavy

string_text
min
14
median
25
mean
24.98
max
39

fwr1_aa_light

string_text
min
20
median
26
mean
25.59
max
36

fwr1_end_heavy

string_label
  • 21124%
  • 21215%
  • 1907%

fwr1_end_light

string_label
  • 16813%
  • 18211%
  • 17110%

fwr1_heavy

string_text
min
42
median
75
mean
74.96
max
117

fwr1_light

string_text
min
60
median
78
mean
76.79
max
108

fwr1_start_heavy

string_label
  • 13723%
  • 13814%
  • 1167%

fwr1_start_light

string_label
  • 9413%
  • 10513%
  • 9811%

fwr2_aa_heavy

string_text
min
10
median
17
mean
17.00
max
31

fwr2_aa_light

string_text
min
14
median
17
mean
17.00
max
26

fwr2_end_heavy

string_label
  • 28623%
  • 28715%
  • 2657%

fwr2_end_light

string_label
  • 25414%
  • 24010%
  • 2448%

fwr2_heavy

string_text
min
30
median
51
mean
51.00
max
93

fwr2_light

string_text
min
43
median
51
mean
51.00
max
78

fwr2_start_heavy

string_label
  • 23624%
  • 23715%
  • 2157%

fwr2_start_light

string_label
  • 20414%
  • 19010%
  • 1948%

fwr3_aa_heavy

string_text
min
32
median
38
mean
38.00
max
58

fwr3_aa_light

string_text
min
29
median
36
mean
36.02
max
53

fwr3_end_heavy

string_label
  • 42422%
  • 4259%
  • 4036%

fwr3_end_light

string_label
  • 37114%
  • 35710%
  • 3618%

fwr3_heavy

string_text
min
96
median
114
mean
114.01
max
175

fwr3_light

string_text
min
87
median
108
mean
108.07
max
159

fwr3_start_heavy

string_label
  • 31122%
  • 3129%
  • 2906%

fwr3_start_light

string_label
  • 26414%
  • 25010%
  • 2548%

fwr4_aa_heavy

string_text
min
7
median
11
mean
10.99
max
12

fwr4_aa_light

string_text
min
4
median
10
mean
9.96
max
11

0.00% empty

fwr4_end_heavy

string_label
  • 499.04%
  • 502.03%
  • 496.03%

fwr4_end_light

string_label
  • 428.010%
  • 414.07%
  • 429.06%

0.00% empty

fwr4_heavy

string_text
min
21
median
33
mean
32.96
max
36

fwr4_light

string_text
min
13
median
30
mean
29.91
max
33

0.00% empty

fwr4_start_heavy

string_label
  • 467.04%
  • 470.03%
  • 464.03%

fwr4_start_light

string_label
  • 399.010%
  • 385.08%
  • 400.07%

0.00% empty

germline_alignment_aa_heavy

string_text
min
107
median
123
mean
122.92
max
164

germline_alignment_aa_light

string_text
min
98
median
108
mean
108.94
max
126

germline_alignment_heavy

string_text
min
322
median
369
mean
369.64
max
493

germline_alignment_light

string_text
min
296
median
325
mean
327.80
max
378

j_alignment_end_heavy

string_label
  • 3649%
  • 3679%
  • 3708%

j_alignment_end_light

string_label
  • 32224%
  • 32517%
  • 33113%

j_alignment_start_heavy

string_label
  • 3224%
  • 3244%
  • 3254%

j_alignment_start_light

string_label
  • 28811%
  • 28510%
  • 2897%

j_call_heavy

string_label
  • IGHJ4*0251%
  • IGHJ3*0213%
  • IGHJ5*0211%

j_call_light

string_label
  • IGKJ1*0118%
  • IGLJ2*0117%
  • IGKJ2*0115%

j_cigar_heavy

string_text
min
7
median
12
mean
12.15
max
17

j_cigar_light

string_text
min
7
median
13
mean
12.58
max
16

j_germline_alignment_aa_heavy

string_label
  • FDYWGQGTLVTVSS15%
  • DYWGQGTLVTVSS14%
  • YFDYWGQGTLVTVSS14%

j_germline_alignment_aa_light

string_label
  • VFGGGTKLTVL13%
  • YTFGQGTKLEIK10%
  • VVFGGGTKLTVL9%

j_germline_alignment_heavy

string_text
min
22
median
46
mean
46.00
max
63

j_germline_alignment_light

string_label
  • GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC7%
  • GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC6%
  • GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC6%

j_germline_end_heavy

string_label
  • 4849%
  • 6216%
  • 5014%

j_germline_end_light

string_label
  • 3876%
  • 3914%
  • 363%

j_germline_start_heavy

string_label
  • 115%
  • 512%
  • 611%

j_germline_start_light

string_label
  • 129%
  • 223%
  • 318%

j_identity_heavy

string_label
  • 100.069%
  • 97.9172%
  • 97.6742%

j_identity_light

string_label
  • 100.080%
  • 97.3684%
  • 97.2223%

j_score_heavy

string_label
  • 92.9769%
  • 83.3637%
  • 91.0546%

j_score_light

string_label
  • 73.74927%
  • 69.90415%
  • 67.98114%

j_sequence_alignment_aa_heavy

string_text
min
7
median
15
mean
14.74
max
20

j_sequence_alignment_aa_light

string_text
min
2
median
12
mean
11.44
max
19

j_sequence_alignment_heavy

string_text
min
22
median
46
mean
46.00
max
63

j_sequence_alignment_light

string_text
min
7
median
37
mean
36.23
max
58

j_sequence_end_heavy

string_label
  • 5003%
  • 5033%
  • 4973%

j_sequence_end_light

string_label
  • 42910%
  • 4157%
  • 4306%

j_sequence_start_heavy

string_label
  • 4582%
  • 4572%
  • 4542%

j_sequence_start_light

string_label
  • 3957%
  • 3926%
  • 3935%

j_support_heavy

string_text
min
5
median
9
mean
11.86
max
22

j_support_light

string_text
min
5
median
9
mean
8.88
max
9

junction_aa_heavy

string_text
min
5
median
17
mean
17.79
max
60

junction_aa_length_heavy

string_label
  • 16.011%
  • 17.011%
  • 18.010%

junction_aa_length_light

string_label
  • 11.045%
  • 12.022%
  • 13.020%

junction_aa_light

string_text
min
6
median
11
mean
11.76
max
25

junction_heavy

string_text
min
15
median
51
mean
53.36
max
180

junction_length_heavy

string_label
  • 48.011%
  • 51.011%
  • 54.010%

junction_length_light

string_label
  • 33.045%
  • 36.022%
  • 39.020%

junction_light

string_text
min
18
median
33
mean
35.29
max
75

locus_heavy

string_label
  • H100%

locus_light

string_label
  • K61%
  • L39%
  • H0%

meta_Age

string_label
  • 3856%
  • 5017%
  • 4517%

meta_Author

string_label
  • Jaffe et al., 2022100%

meta_BSource

string_label
  • PBMC100%

meta_BType

string_label
  • Naive-B-Cells45%
  • Memory-B-Cells38%
  • Unsorted-B-Cells15%

meta_Chain

string_label
  • Paired100%

meta_Disease

string_label
  • SARS-COV-227%
  • CMV17%

56.1% empty

meta_Isotype

string_label
  • All100%

meta_Link

string_label
  • https://doi.org/10.1038/s41586-022-05371-z100%

meta_Longitudinal

string_label
  • no100%

meta_Run

string_label
  • 12871544%
  • 12871464%
  • 12871534%

meta_Species

string_label
  • human100%

meta_Subject

string_label
  • Donor-356%
  • Donor-417%
  • Donor-117%

meta_Unique sequences

int
min
843
median
14,005
mean
14154.11
max
19,839

meta_Vaccine

string_label

No distribution reported for this column.

100.0% empty

np1_heavy

string_text
min
1
median
7
mean
8.34
max
90

4.6% empty

np1_length_heavy

string_label
  • 68%
  • 48%
  • 58%

np1_length_light

string_label
  • 044%
  • 216%
  • 113%

np1_light

string_text
min
1
median
2
mean
2.92
max
44

45.6% empty

np2_heavy

string_text
min
1
median
7
mean
7.80
max
146

10.4% empty

np2_length_heavy

string_label
  • 4.09%
  • 3.08%
  • 5.08%

2.9% empty

np2_length_light

string_label
  • 3.00%
  • 11.00%

100.0% empty

np2_light

string_label
  • AGG0%
  • GTTTTTTCCTC0%

100.0% empty

productive_heavy

string_label
  • T100%

productive_light

string_label
  • T100%

rev_comp_heavy

string_label
  • F100%

rev_comp_light

string_label
  • F100%
  • T0%

sequence_alignment_aa_heavy

string_text
min
107
median
123
mean
122.93
max
164

sequence_alignment_aa_light

string_text
min
98
median
108
mean
108.94
max
126

sequence_alignment_heavy

string_text
min
322
median
369
mean
369.64
max
493

sequence_alignment_light

string_text
min
296
median
325
mean
327.80
max
378

sequence_heavy

string_text
min
426
median
571
mean
583.02
max
1,126

sequence_id_heavy

string_text
min
27
median
27
mean
27
max
27

sequence_id_light

string_text
min
27
median
27
mean
27
max
27

sequence_light

string_text
min
389
median
568
mean
593.90
max
1,327

source_file

string_label
  • 1287154_1_Paired_All.csv.gz4%
  • 1287146_1_Paired_All.csv.gz4%
  • 1287153_1_Paired_All.csv.gz4%

stop_codon_heavy

string_label
  • F100%

stop_codon_light

string_label
  • F100%

v_alignment_end_heavy

string_label
  • 29627%
  • 29516%
  • 29412%

v_alignment_end_light

string_label
  • 28413%
  • 28712%
  • 28610%

v_alignment_start_heavy

string_label
  • 1100%

v_alignment_start_light

string_label
  • 1100%

v_call_heavy

string_label
  • IGHV3-23*019%
  • IGHV4-39*015%
  • IGHV4-59*014%

v_call_light

string_label
  • IGKV3-20*0110%
  • IGKV1-39*019%
  • IGKV4-1*016%

v_cigar_heavy

string_text
min
10
median
13
mean
13.00
max
30

v_cigar_light

string_text
min
10
median
13
mean
13.06
max
25

v_frameshift_heavy

string_label
  • F100%

v_frameshift_light

string_label
  • F100%

v_germline_alignment_aa_heavy

string_text
min
73
median
98
mean
98.00
max
101

v_germline_alignment_aa_light

string_text
min
87
median
96
mean
96.66
max
106

v_germline_alignment_heavy

string_text
min
219
median
295
mean
295.27
max
352

v_germline_alignment_light

string_text
min
261
median
287
mean
289.99
max
338

v_germline_end_heavy

string_label
  • 29628%
  • 29516%
  • 29412%

v_germline_end_light

string_label
  • 28413%
  • 28712%
  • 28610%

v_germline_start_heavy

string_label
  • 199%
  • 30%
  • 50%

v_germline_start_light

string_label
  • 199%
  • 31%
  • 21%

v_identity_heavy

string_text
min
4
median
5
mean
5.47
max
6

v_identity_light

string_text
min
4
median
5
mean
5.46
max
6

v_score_heavy

string_label
  • 463.03713%
  • 461.4798%
  • 459.9218%

v_score_light

string_label
  • 444.348%
  • 449.0147%
  • 447.4566%

v_sequence_alignment_aa_heavy

string_text
min
73
median
98
mean
98.02
max
117

v_sequence_alignment_aa_light

string_text
min
86
median
96
mean
96.66
max
112

v_sequence_alignment_heavy

string_text
min
219
median
295
mean
295.27
max
352

v_sequence_alignment_light

string_text
min
261
median
287
mean
289.99
max
338

v_sequence_end_heavy

string_label
  • 43211%
  • 4317%
  • 4335%

v_sequence_end_light

string_label
  • 3917%
  • 3946%
  • 3926%

v_sequence_start_heavy

string_label
  • 13723%
  • 13814%
  • 1167%

v_sequence_start_light

string_label
  • 9413%
  • 10513%
  • 9811%

v_support_heavy

string_text
min
5
median
10
mean
13.60
max
23

v_support_light

string_text
min
5
median
10
mean
13.62
max
23

vj_in_frame_heavy

string_label
  • T100%

vj_in_frame_light

string_label
  • T100%